Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015937777.1_cds_XP_016482929.1_74099
CDS Infomation

[gene=LOC107803673] [db_xref=GeneID:107803673] [protein=4-coumarate--CoA ligase 1] [protein_id=XP_016482929.1] [location=join(28919..29926,30759..30957,32659..32872,32977..33079,33445..33564)] [gbkey=CDS]
Sequence

ATGCCAATGGAGACTACTACAGAAACAAAGCAATCAGGAGATTTAATTTTCCGATCAAAA
CTCCCTGATATTTACATCCCTAAACATTTACCTTTACATTCTTATTGTTTTGAAAACATT
TCGGAGTTTAGTTCTCGTCCCTGTTTGATTAATGGAGCCAACGATCAAATTTATACTTAT
GCTGAGGTTGAGCTCACTTGCAGAAAAGTTGCAGTTGGTCTTAACAAGTTAGGGATCCAA
CAAAAGGACACGATTATGATCCTTTTGCCGAATTCCCCTGAATTTGTGTTTGCTTTTATG
GGCGCTTCATATTTAGGAGCCATTTCTACAATGGCCAATCCTCTGTTTACACCTGCAGAG
GTTGTAAAACAAGCCAAAGCCTCAAGTGCTAAGATTATTATAACTCAATCGTGCTTTGTG
GGCAAAGTGAAGGATTACGCAAGTGAAAATGATGTGAAGGTCATTTGTATTGACTCTGCA
CCGGAAGGTTGTCTTCATTTCTCAGAATTGACACAATCCGATGAGCATGAAATTCCTGAG
GTGAAAATCCAGCCAGACGACGTCGTTGCGCTGCCGTATTCCTCTGGTACTACAGGGCTG
CCGAAAGGTGTGATGTTGACGCACAAGGGATTAGTCACGAGCGTTGCACAACAAGTTGAC
GGTGAAAATGCGAATTTGTATATGCACAGTGAGGATGTATTGATGTGTGTGTTGCCTTTG
TTCCATATATACTCACTCAATTCCATTTTGCTTTGTGGATTGAGAGTCGGTGCAGCGATT
TTGATTATGCAGAAATTTGACATTGCTCCGTTCCTGGAGTTAATACAGAAGTATAAGGTG
TCAATTGGGCCATTTGTGCCGCCTATTGTTCTGGCTATTGCTAAGAGTCCAATTGTTGAT
AGCTATGATCTTTCCTCAGTAAGGACTGTCATGTCTGGGGCTGCACCATTAGGAAAAGAA
CTCGAAGACGCTGTGAGAACCAAATTCCCTAACGCTAAACTTGGCCAGGGTTATGGAATG
ACGGAAGCTGGGCCGGTGTTGGCAATGTGTTTGGCATTTGCAAAAGAACCCTTTGATATT
AAATCAGGGGCATGTGGTACTGTTGTGAGGAACGCCGAGATGAAAATTGTAGATCCGGAT
ACGGGTTGCTCTCTTCCTCGTAACCAACCCGGTGAGATTTGCATTAGAGGTGACCAGATC
ATGAAAGGTTACCTGAATGATCCCGAGGCCACAACGAGAACAATAGACAAAGAAGGATGG
TTACACACTGGCGACATTGGGTTCATTGACGAGGATGACGAGCTTTTCATTGTGGATCGA
TTGAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCACCTGCAGAAATTGAAGCCCTT
CTTCTCAACCATCCCAACATTTCTGATGCTGCTGTTGTCCCCATGAAAGATGAGCAAGCA
GGAGAAGTTCCAGTGGCTTTTGTTGTTAGGTCAAATGGATCTGCCATCACTGAGGATGAA
GTCAAGGATTTCATCTCTAAACAGGTGATATTTTATAAGAGAGTAAAGCGTGTATTTTTC
GTGGAGACGGTACCCAAATCTCCGTCGGGAAAAATTCTTAGAAAGGACTTGAGAGCTAGA
CTGGCTGCTGGTGTTCCAAATTAA

Peptide Sequence

PEP ID

XP_016482929.1
PEP Infomation

PREDICTED: 4-coumarate--CoA ligase 1 [Nicotiana tabacum]
Sequence

MPMETTTETKQSGDLIFRSKLPDIYIPKHLPLHSYCFENISEFSSRPCLINGANDQIYTY
AEVELTCRKVAVGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAE
VVKQAKASSAKIIITQSCFVGKVKDYASENDVKVICIDSAPEGCLHFSELTQSDEHEIPE
VKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSEDVLMCVLPL
FHIYSLNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVLAIAKSPIVD
SYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDI
KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGW
LHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQA
GEVPVAFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLRAR
LAAGVPN

Transcript Sequence

Gene sequence data has not been registered.